import ij.*;
import ij.process.*;
import ij.gui.*;
import ij.io.*;
import java.awt.*;
import java.io.*;
import ij.plugin.*;

/** This plugin opens images from a text file list. The list can contain full paths
	or just file names. The default directory is the one containing the text file. */
public class RawList_toTiffMontage implements PlugIn {

    public void run(String arg) {
        OpenDialog od = new OpenDialog("List Opener", null);
        String name = od.getFileName();
        if (name==null)
            return;
        String dir = od.getDirectory();
        String windowName;
        Opener o = new Opener();
        int count = 0;
        String separator = System.getProperty("file.separator");
        try {
            BufferedReader r = new BufferedReader(new FileReader(dir+name));
            while (true) {
                String path = r.readLine();
                if (path==null)
                    break;
                else {
	windowName=path;
                    if (path.indexOf(separator)<0)
                        path = dir + path;
		IJ.run("Raw...", "path='"+path+"' image='16-bit Unsigned' width=64 height=64 offset=0 number=90 gap=0");
		IJ.run("Fire");
		IJ.run("Make Montage...", "columns=8 rows=8 scale=1 first=1 last=64 increment=1 label borders");
		IJ.run("Rename...", "title=M_"+windowName);
		IJ.run("Tiff...", "path='"+dir+"M_"+windowName);
		IJ.run("Close");
		IJ.run("Close");
//                    ImagePlus imp = o.openImage(path);
//                    count++;
//                    if (imp!=null) {
//                        IJ.write(count+" + " +path);
//                        imp.show();
//                    } else
//                        IJ.write(count+" - "+path);
                }
            }
            r.close();
        } catch (IOException e) {
            IJ.error(""+e);
            return;
        }
    }

}